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sci-biology
The sci-biology category contains software that can be used in biological and related scientific environments.
Packages
Stabilization
4
Outdated
34
Pull requests
2
Bugs
143
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1
Outdated Packages
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sci-biology/abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
sci-biology/augustus
Eukaryotic gene predictor
sci-biology/bcftools
Utilities for variant calling and manipulating VCF and BCF files
sci-biology/bioperl
Perl tools for bioinformatics - Core modules
sci-biology/bioperl-network
Perl tools for bioinformatics - Analysis of protein-protein interaction networks
sci-biology/bioperl-run
Perl wrapper modules for key bioinformatics applications
sci-biology/blat
The BLAST-Like Alignment Tool, a fast genomic sequence aligner
sci-biology/bowtie
Popular short read aligner for Next-generation sequencing data
sci-biology/bwa
Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner
sci-biology/cd-hit
Clustering Database at High Identity with Tolerance
sci-biology/clustalw-mpi
An MPI implemention of the ClustalW general purpose multiple alignment algorithm
sci-biology/exonerate
Generic tool for pairwise sequence comparison
sci-biology/fastx_toolkit
Tools for Short Read FASTA/FASTQ file processing
sci-biology/foldingathome
Folding@Home is a distributed computing project for protein folding
sci-biology/gmap
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
sci-biology/infernal
Inference of RNA alignments
sci-biology/kalign
Global and progressive multiple sequence alignment
sci-biology/kallisto
Near-optimal RNA-Seq quantification
sci-biology/libgtextutils
Gordon Text utils Library
sci-biology/mafft
Multiple sequence alignments using a variety of algorithms
sci-biology/mcl
A Markov Cluster Algorithm implementation
sci-biology/mothur
A suite of algorithms for ecological bioinformatics
sci-biology/mrbayes
Bayesian Inference of Phylogeny
sci-biology/muscle
Multiple sequence comparison by log-expectation
sci-biology/samtools
Utilities for analysing and manipulating the SAM/BAM alignment formats
sci-biology/seaview
A graphical multiple sequence alignment editor
sci-biology/seqan
C++ Sequence Analysis Library
sci-biology/sim4
A program to align cDNA and genomic DNA
sci-biology/STAR
STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays
sci-biology/t-coffee
A multiple sequence alignment package
sci-biology/trf
Tandem Repeats Finder
sci-biology/trnascan-se
tRNA detection in large-scale genome sequences
sci-biology/ucsc-genome-browser
The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath
sci-biology/wise
Intelligent algorithms for DNA searches
Description
Based on the data of
repology.org
, there might be a new version available for these packages.
Please don't solely rely on this information, as the repology data might not be accurate.
Packages